Program
Monday 21 September 2026
| 12:30 – 13:00 | Registration |
| 13:00 – 13:15 | Introductory word | Ivan Novotny (IMG) & Pavel Moudry (IMTM) |
| 13:15 – 13:45 | scanR platform – introduction | Manoel Veiga Gutierrez (EVIDENT) |
| 13:45 – 14:10 | Application of scanR system in plants: from whole tissue to single cell | Václav Bačovský (IBP) |
| 14:10 – 14:25 | Functional analysis of selected variants of uncertain significance in TP53 gene using scanR | Silvia Petrezselyová (IMG) |
| 14:25 – 14:40 | Detection of nucleolar protein interactions by proximity ligation assay on scanR | Markéta Brodinová (IMG) |
| Coffee break | |
| 15:00 – 15:30 | scanR platform – development | TBA (EVIDENT) |
| 15:30 – 15:45 | p21–PCNA coupling enables replication-stress recovery and survival in p53-deficient cells | David Lukac (SDU) |
| 15:45 – 16:00 | User experience with scanR | Michaela Dohnálková (IMG) |
| 16:00 – 16:15 | Human organoids for modelling chronic pain: exploring high-content imaging approaches for chemotherapy-induced peripheral neuropathy and visceral pain | Alessandra Toti (University of Florence) |
| 16:15 – 16:30 | Deubiquitination in PARPi sensitivity and genome integrity, dissected by quantitative image-based cytometry | Marco Gatti (University of Zurich) |
| 16:30 – 16:45 | The nanoscale architecture of RAD51 repair assemblies in human chromatin | Jan Novotný (SDU) |
| 16:45 – 17:00 | Of mice and men: investigating genomic instability and its consequences in mouse brains and human cells using high-content microscopy | Gonçalo Oliveira (IMG) & Kristína Jendruchová (IMG) |
| 17:00 – 18:00 | SELF-INTRODUCTIONS Participants and application specialists (3 min short talks) |
| 18:00 | Wrap-up and closing of the DAY 01 |
Tuesday 22 Tuesday 2026
| 09:00 – 09:45 | LECTURE AI-Assisted Analysis in scanR | Manoel Veiga Gutierrez (EVIDENT) Introduction to the scanR AI / TruAI workflow and explanation of functionality |
| Coffee break | |
| 10:00 – 11:30 | PRACTICAL HANDS-ON SESSIONS scanR analysis – software intro | Ivan Novotný (IMG); Pavel Moudrý (IMTM); Manoel Veiga Gutierrez (EVIDENT); Tomáš Jendrůlek (SVEN BioLabs) Step-by-step dataset opening, channel visualization, parameter selection, derived parameter definition, results gating and export |
| Lunch | |
| 12:30 – 15:00 | PRACTICAL HANDS-ON SESSIONS scanR – AI based segmentation |
| Coffee break | |
| 15:30 – 17:00 | PRACTICAL HANDS-ON SESSIONS scanR analysis – user data processiong | Manoel Veiga Gutierrez (EVIDENT); Tomáš Jendrůlek (SVEN BioLabs); Ivan Novotný (IMG); Pavel Moudrý (IMTM) |
| 17:00 – 17:30 | Wrap-up and closing of the DAY 02 |
| 17:30 – 18:30 | HARDWARE PRACTICE scanR DFC |
| 18:30 – 20:30 | Indoor get-together evening |
Wednesday 23 September 2026
| 09:00 – 09:45 | LECTURE Training Custom AI Models | Manoel Veiga Gutierrez (EVIDENT) Annotation strategy, model training and validation |
| Coffee break | |
| 10:00 – 11:30 | PRACTICAL HANDS-ON SESSIONS cellSense – software introduction | Manoel Veiga Gutierrez (EVIDENT); Tomáš Jendrůlek (SVEN BioLabs); Tomáš Pop (EVIDENT) |
| Lunch | |
| 12:30 – 15:00 | PRACTICAL HANDS-ON SESSIONS cellSense AI model training | Manoel Veiga Gutierrez (EVIDENT); Tomáš Jendrůlek (SVEN BioLabs); Tomáš Pop (EVIDENT) |
| Coffee break | |
| 15:30 – 17:00 | PRACTICAL HANDS-ON SESSIONS AI model use in scanR analysis | Manoel Veiga Gutierrez (EVIDENT); Tomáš Jendrůlek (SVEN BioLabs); Tomáš Pop (EVIDENT) |
| 17:00 – 17:30 | DISCUSSION scanR platform perspectives |
| 17:30 | Wrap-up and meeting closing |